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r语言go分析气泡图 r语言分析geo数据( 三 )

IT技术IDA


00071 Fatty acid degradation8492 3538570.068800169 1.791869919 "[FvH4_1g26810, FvH4_1g08890, FvH4_5g05130, FvH4_2g14760, FvH4_4g18500, FvH4_1g25230, FvH4_2g37760, FvH4_6g40560]"0.732230372
04712 Circadian rhythm - plant5492 1438570.024734738 2.799796748 "[FvH4_2g29440, FvH4_7g29370, FvH4_1g17250, FvH4_7g01160, FvH4_5g22570]"0.737095202
03410 Base excision repair8492 3438570.059397181.844571975 "[FvH4_4g29150, FvH4_4g36650, FvH4_2g21980, FvH4_6g11530, FvH4_2g39710, FvH4_4g35010, FvH4_2g40160, FvH4_4g35030]"0.737514985
00130 Ubiquinone and other terpenoid-quinone biosynthesis8492 3438570.059397181.844571975 "[FvH4_4g28800, FvH4_4g09340, FvH4_3g40570, FvH4_6g26610, FvH4_6g27940, FvH4_6g26600, FvH4_4g06180, FvH4_6g16460]"0.737514985
00460 Cyanoamino acid metabolism7492 3238570.103957465 1.714875508 "[FvH4_4g26180, FvH4_7g07540, FvH4_5g38450, FvH4_7g05220, FvH4_1g19090, FvH4_4g13290, FvH4_3g43510]"0.737602967
00310 Lysine degradation8492 3038570.030124137 2.090514905 "[FvH4_1g08890, FvH4_5g05130, FvH4_3g23070, FvH4_1g16260, FvH4_1g25230, FvH4_2g36660, FvH4_6g40560, FvH4_3g25420]"0.748082742
00785 Lipoic acid metabolism2492 438570.081725815 3.919715447 "[FvH4_6g44960, FvH4_4g37350]"0.761071655
00601 Glycosphingolipid biosynthesis - lacto and neolacto series2492 438570.081725815 3.919715447 "[FvH4_6g11740, FvH4_3g04760]"0.761071655
00940 Phenylpropanoid biosynthesis26492 149 38570.056260767 1.367954384 "[FvH4_2g05780, FvH4_4g23870, FvH4_5g35170, FvH4_7g32980, FvH4_2g30540, FvH4_2g26620, FvH4_7g05220, FvH4_3g44420, FvH4_6g16060, FvH4_4g06180, FvH4_6g16460, FvH4_3g43510, FvH4_7g19130, FvH4_4g26180, FvH4_6g28410, FvH4_6g27940, FvH4_4g36130, FvH4_3g46010, FvH4_1g16790, FvH4_6g30610, FvH4_4g09340, FvH4_3g15230, FvH4_3g40570, FvH4_5g22390, FvH4_6g27610, FvH4_5g21320]"0.762077663
00450 Selenocompound metabolism 4492 1538570.113762224 2.090514905 "[FvH4_2g38710, FvH4_7g04540, FvH4_6g24170, FvH4_2g41260]"0.770480519
00563 Glycosylphosphatidylinositol(GPI)-anchor biosynthesis 3492 1338570.224775136 1.809099437 "[FvH4_5g04770, FvH4_2g15820, FvH4_1g19740]"0.797416555
03008 Ribosome biogenesis in eukaryotes 6492 3338570.238324783 1.425351072 "[FvH4_1g27070, FvH4_1g17250, FvH4_1g16590, FvH4_2g38700, FvH4_3g27590, FvH4_1g22910]"0.807054378
00860 Porphyrin and chlorophyll metabolism8492 4738570.244407142 1.334371216 "[FvH4_3g20600, FvH4_5g33760, FvH4_7g25640, FvH4_2g27000, FvH4_3g20590, FvH4_1g04700, FvH4_2g23050, FvH4_4g37020]"0.809259204
00053 Ascorbate and aldarate metabolism 8492 4738570.244407142 1.334371216 "[FvH4_1g08890, FvH4_5g05130, FvH4_3g33910, FvH4_6g20720, FvH4_7g08190, FvH4_7g13380, FvH4_1g25230, FvH4_5g20650]"0.809259204
00944 Flavone and flavonol biosynthesis 2492 538570.124932679 3.135772358 "[FvH4_6g17070, FvH4_5g14010]"0.809346486
00040 Pentose and glucuronate interconversions15492 9638570.236599083 1.224911077 "[FvH4_2g26010, FvH4_6g41430, FvH4_6g17310, FvH4_6g17430, FvH4_3g01680, FvH4_5g27090, FvH4_6g53340, FvH4_2g19540, FvH4_5g33570, FvH4_1g00260, FvH4_2g25970, FvH4_7g08190, FvH4_1g26360, FvH4_4g21500, FvH4_1g27720]"0.819843336
03450 Non-homologous end-joining2492 738570.221439565 2.239837398 "[FvH4_4g35010, FvH4_4g35030]"0.824862379
00942 Anthocyanin biosynthesis2492 738570.221439565 2.239837398 "[FvH4_3g19220, FvH4_7g33840]"0.824862379
这是参考以下教程用自己的数据实现一遍 ， 
R语言ggplot2画图系列——Pathway富集分析气泡图 - 生信技能树 - Powered by Discuz!;action=printabletid=927
R语言ggplot2绘图教程——Pathway富集分析气泡图 - CSDN博客
如何使用R语言的ggplot2包画气泡图ggplot2：不用说，画图神器
reshape2：变形，整合
stringr：处理字符串
lubridate：处理时间
RODBC：链接数据库
plyr：拆分，合并，重组 。
knitr：谢益辉，自动化报告包
ggmap：ggplot2+map的一个包，主要用来画地图 ， 但是ggplot2的功能也都有

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